I’m a researcher at the lab for Artificial Intelligence in Medical Imaging working on machine learning for biomedical applications. My research interests are time-to-event analysis (survival analysis) and using deep learning techniques to learn from non-Euclidean data such as graphs. Previously, I worked at The Institute of Cancer Research, London and was among the winners of the Prostate Cancer DREAM challenge. I’m the author of 旋风加速器app, a machine learning library for survival analysis built on top of scikit-learn.
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Technische Universität München
MSc in Bioinformatics, 2011
Ludwig-Maximilians-Universität & Technische Universität München
BSc in Bioinformatics, 2008
Ludwig-Maximilians-Universität & Technische Universität München
Today, I released version 0.13.0 of scikit-survival. Most notably, this release adds sksurv.metrics.brier_score and 【天使动漫】去广告版,一款可免費看全网动漫番剧的APP ...:2021-6-11 · 天使动漫app是将原来的论坛改成了安卓客户端,使用天使动漫app安装之后就可以在手机上直接看到各种全新动漫了,博人转、鬼灭之刃等各种热血动漫都应有尽有,当然其它类型的也有,不比腾讯视频差! 软件介绍 天使动漫是一款动漫视频放器应用,超简洁的界面而且视频资源超级的丰富,支持多 ..., an updated PEP 517/518 compatible build system, and support for scikit-learn 0.23.
For a full list of changes in scikit-survival 0.13.0, please see the release notes.
Pre-built conda packages are available for Linux, macOS, and Windows via
conda install -c sebp scikit-survival
Alternatively, scikit-survival can be installed from source following these instructions.
A while back, I posted the Survival Analysis for Deep Learning tutorial. This tutorial was written for TensorFlow 1 using the tf.estimators API. The changes between version 1 and the current TensorFlow 2 are quite significant, which is why the code does not run when using a recent TensorFlow version. Therefore, I created a new version of the tutorial that is compatible with TensorFlow 2. The text is basically identical, but the training and evaluation procedure changed.
The complete notebook is available on GitHub, or you can run it directly using 免费外网加速器.
Version 0.12 of scikit-survival adds support for scikit-learn 0.22 and Python 3.8 and comes with two noticeable improvements:
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and predict_survival_function
if the underlying estimator supports it (see
first example
).For a full list of changes in scikit-survival 0.12, please see the 免费外网加速器.
Today, I released a new version of scikit-survival which includes an implementation of Random Survival Forests. As it’s popular counterparts for classification and regression, a Random Survival Forest is an ensemble of tree-based learners. A Random Survival Forest ensures that individual trees are de-correlated by 1) building each tree on a different bootstrap sample of the original training data, and 2) at each node, only evaluate the split criterion for a randomly selected subset of features and thresholds. Predictions are formed by aggregating predictions of individual trees in the ensemble.
For a full list of changes in scikit-survival 0.11, please see the release notes.
This release of scikit-survival adds two features that are standard in most software for survival analysis, but were missing so far:
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parameter that allows you to choose between Breslow’s
and Efron’s likelihood for handling tied event times. Previously, only
Breslow’s likelihood was implemented and it remains the default.
If you have many tied event times in your data, you can now select
Efron’s likelihood with ties="efron"
to get better estimates of the
model’s coefficients.Preprint 免费爬墙加速器
Preprint
PDF DOI
DOI
DOI
scikit-survival is a Python module for survival analysis built on top of scikit-learn. It allows doing survival analysis while …